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Dateien nach "mod/cyanide" hochladen

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kilian 2026-07-29 13:03:00 +02:00
parent 3020cf8ca3
commit 941192eafb
2 changed files with 136 additions and 8 deletions
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144
mod/cyanide/cyanide.py
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@ -8,7 +8,7 @@ cyanide = Graph.fromGMLString("""graph [
edge [ source 1 target 2 label "#" ]
]""", name="Cyanide")
#adenine = Graph.fromGMLString(
adenine = Graph.fromGMLString(
"""graph [
node [ id 1 label "C" ]
node [ id 2 label "C" ]
@ -42,9 +42,9 @@ cyanide = Graph.fromGMLString("""graph [
edge [ source 7 target 14 label "-" ]
edge [ source 15 target 3 label "-" ]
]"""
#, name="Adenine")
, name="Adenine")
chain = Rule.fromGMLString(
chainN = Rule.fromGMLString(
"""rule [
left [
edge [ source 1 target 2 label "-" ]
@ -67,7 +67,85 @@ chain = Rule.fromGMLString(
]"""
)
chainC = Rule.fromGMLString(
"""rule [
left [
edge [ source 1 target 2 label "-" ]
edge [ source 1 target 3 label "-" ]
edge [ source 3 target 4 label "#" ]
edge [ source 5 target 7 label "-" ]
]
context [
node [ id 1 label "C" ]
node [ id 2 label "H"]
node [ id 3 label "C"]
node [ id 4 label "N"]
node [ id 5 label "H"]
node [ id 6 label "H"]
node [ id 7 label "N"]
edge [ source 6 target 7 label "-" ]
]
right [
edge [ source 1 target 3 label "=" ]
edge [ source 3 target 4 label "-" ]
edge [ source 3 target 7 label "-" ]
edge [ source 4 target 2 label "-" ]
edge [ source 4 target 5 label "-" ]
]
]"""
)
branchtriple = Rule.fromGMLString(
"""rule [
left [
edge [ source 2 target 3 label "#" ]
edge [ source 5 target 6 label "-" ]
]
context [
node [ id 1 label "_X" ]
node [ id 2 label "C"]
node [ id 3 label "N"]
node [ id 4 label "N"]
node [ id 5 label "C"]
node [ id 6 label "_X"]
edge [ source 1 target 2 label "-" ]
edge [ source 4 target 5 label "#" ]
]
right [
edge [ source 2 target 3 label "=" ]
edge [ source 3 target 6 label "-" ]
edge [ source 2 target 5 label "-" ]
]
constrainLabelAny [ label "_X" labels [ label "H" label "C" ] ]
]"""
)
branchdouble = Rule.fromGMLString(
"""rule [
left [
edge [ source 2 target 3 label "=" ]
edge [ source 5 target 6 label "-" ]
]
context [
node [ id 1 label "_X" ]
node [ id 2 label "C"]
node [ id 3 label "N"]
node [ id 4 label "N"]
node [ id 5 label "C"]
node [ id 6 label "_X"]
edge [ source 1 target 2 label "-" ]
edge [ source 4 target 5 label "#" ]
]
right [
edge [ source 2 target 3 label "-" ]
edge [ source 3 target 6 label "-" ]
edge [ source 2 target 5 label "-" ]
]
constrainLabelAny [ label "_X" labels [ label "H" label "C" ] ]
]"""
)
##branchtripleH = Rule.fromGMLString(
"""rule [
left [
edge [ source 2 target 3 label "#" ]
@ -89,9 +167,9 @@ branchtriple = Rule.fromGMLString(
edge [ source 2 target 5 label "-" ]
]
]"""
)
#)
branchtriple = Rule.fromGMLString(
#branchdoubleH = Rule.fromGMLString(
"""rule [
left [
edge [ source 2 target 3 label "=" ]
@ -113,7 +191,56 @@ branchtriple = Rule.fromGMLString(
edge [ source 2 target 5 label "-" ]
]
]"""
)
#)
#branchtripleC = Rule.fromGMLString(
"""rule [
left [
edge [ source 2 target 3 label "#" ]
edge [ source 5 target 6 label "-" ]
]
context [
node [ id 1 label "H" ]
node [ id 2 label "C"]
node [ id 3 label "N"]
node [ id 4 label "N"]
node [ id 5 label "C"]
node [ id 6 label "C"]
edge [ source 1 target 2 label "-" ]
edge [ source 4 target 5 label "#" ]
]
right [
edge [ source 2 target 3 label "=" ]
edge [ source 3 target 6 label "-" ]
edge [ source 2 target 5 label "-" ]
]
]"""
#)
#branchdoubleC = Rule.fromGMLString(
"""rule [
left [
edge [ source 2 target 3 label "=" ]
edge [ source 5 target 6 label "-" ]
]
context [
node [ id 1 label "H" ]
node [ id 2 label "C"]
node [ id 3 label "N"]
node [ id 4 label "N"]
node [ id 5 label "C"]
node [ id 6 label "C"]
edge [ source 1 target 2 label "-" ]
edge [ source 4 target 5 label "#" ]
]
right [
edge [ source 2 target 3 label "-" ]
edge [ source 3 target 6 label "-" ]
edge [ source 2 target 5 label "-" ]
]
]"""
#)
flowPrinter = FlowPrinter()
flowPrinter.printUnfiltered = False
@ -141,8 +268,9 @@ for a in dg.vertices:
flow = Flow(dg)
flow.addSource(cyanide)
#flow.addSink(adenine)
flow.findSolutions()
flow.addSink(adenine)
flow.findSolutions(maxNumSolutions=2)
#flow.findSolutions()
flow.solutions.list()
flow.solutions.print(flowPrinter)

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mod/cyanide/summaryCyanideWildcard.pdf Normal file
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