Usage

Use

python3 uniprot-api.py -t 150 -p 10 -v

Important: use -v to display the differences between the amino acids that MCSA expects, sOG expects, and what UniProt says even in the event that MCSA and UniProt do not line up perfectly.

Flags

-t <number of entries>: go through the first <number of entries> entries in the rhea_unclassified_unique_ec4_candidates.tsv file.

-p <number of uniprot proteins>: limit results by number of uniprot proteins associated with a rhea id. If searching UniProt by a rhea ID yield more than <number of uniprot proteins> results, that rhea entry will be skipped.