diff --git a/mod/n-methylationXanthosine_explicitME.py b/mod/n-methylationXanthosine_explicitME.py index f801975..f8be63c 100644 --- a/mod/n-methylationXanthosine_explicitME.py +++ b/mod/n-methylationXanthosine_explicitME.py @@ -272,25 +272,30 @@ n7methylation = Rule.fromGMLString( left [ node [ id 1 label "N" ] ] - context [ - + context [ node [ id 2 label "C"] node [ id 3 label "N"] node [ id 4 label "H"] + node [ id 5 label "C"] + node [ id 6 label "C"] + node [ id 7 label "O"] edge [ source 2 target 1 label "=" ] edge [ source 3 target 2 label "-" ] edge [ source 2 target 4 label "-" ] + edge [ source 1 target 5 label "-" ] + edge [ source 5 target 6 label "-" ] + edge [ source 6 target 7 label "=" ] ] right [ - node [ id 1 label "N" '+'] - node [ id 5 label "C" ] - node [ id 6 label "H" ] - node [ id 7 label "H" ] - node [ id 8 label "H" ] - edge [ source 1 target 5 label "-" ] - edge [ source 5 target 6 label "-" ] - edge [ source 5 target 7 label "-" ] - edge [ source 5 target 8 label "-" ] + node [ id 1 label "N+"] + node [ id 8 label "C" ] + node [ id 9 label "H" ] + node [ id 10 label "H" ] + node [ id 11 label "H" ] + edge [ source 1 target 8 label "-" ] + edge [ source 8 target 9 label "-" ] + edge [ source 8 target 10 label "-" ] + edge [ source 8 target 11 label "-" ] ] ]""" ) @@ -298,6 +303,7 @@ n7methylation = Rule.fromGMLString( deribolose = Rule.fromGMLString( """rule [ left [ + node [ id 5 label "N+" ] node [ id 8 label "C" ] node [ id 9 label "H" ] node [ id 10 label "C" ] @@ -316,8 +322,8 @@ deribolose = Rule.fromGMLString( node [ id 23 label "H" ] node [ id 24 label "O" ] node [ id 25 label "H" ] - edge [ source 7 target 8 label "-" ] - edge [ source 9 target 8 label "-" ] + edge [ source 7 target 8 label "-" ] + edge [ source 9 target 8 label "-" ] edge [ source 19 target 8 label "-" ] edge [ source 10 target 8 label "-" ] edge [ source 11 target 10 label "-" ] @@ -343,7 +349,6 @@ deribolose = Rule.fromGMLString( node [ id 2 label "H" ] node [ id 3 label "H" ] node [ id 4 label "C" ] - node [ id 5 label "N" ] node [ id 6 label "C" ] node [ id 7 label "N" ] edge [ source 1 target 4 label "-" ] @@ -352,10 +357,9 @@ deribolose = Rule.fromGMLString( edge [ source 4 target 5 label "-" ] ] right [ + node [ id 5 label "N" ] edge [ source 5 target 6 label "-" ] - edge [ source 6 target 7 label "=" ] - node [ id 26 label "H" ] - edge [ source 26 target 7 label "-" ] + edge [ source 6 target 7 label "=" ] ] ]""" ) @@ -411,7 +415,7 @@ n3demethylation = Rule.fromGMLString( node [ id 10 label "H" ] edge [ source 6 target 5 label "-" ] edge [ source 7 target 5 label "-" ] - edge [ source 6 target 8 label "=" ] + edge [ source 7 target 8 label "=" ] edge [ source 7 target 9 label "-" ] edge [ source 9 target 10 label "-" ] ] diff --git a/mod/summaryXanthosine_explicitME.pdf b/mod/summaryXanthosine_explicitME.pdf new file mode 100644 index 0000000..a803a13 Binary files /dev/null and b/mod/summaryXanthosine_explicitME.pdf differ